rs33055343 SNP Detail

Summary

• ID
  rs33055343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66086043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGATGGACAG AGATACTAAA GTAGGTACCA TCTGGCATTT TGTAGACGGT GCTTGCCACT
  CCTTGTTCAA GAACCTTGTT CTAGATAGAA TATTGCACTG ATCAAACTGG AAAGGGAAGA
  AGCCAAGGTC AGCAGCCTCA GTTTTAGGAC ACGACTCGCT CCTGTGCTAA GTGATGAGAA
  GTTTAATAAT GGTTTTATCA CTAAAGTGGT TTTAGTGCAG AACTCATTTG GATAAAATGA
  GGGATAAAAC ATGTAAAAGA GTTGGAGGAA AAACTTGAAA AGGTAATGTA GAAATTCATT
  W
  AAAAAAAAAA AAAAAGCCAA ACCTTTCGGT CTTCCCTAAC TGTCAGCACC CACTGTCCTC
  TGAATATAAT CAGTAGTTCT CATGACATTC ATGTGTTTAA TAGCTTGTGG GGTCAGCCCT
  CATAAATCAA GTGAAAGTTG CAAGACTAAG CACCTTTACT GCAGTATTGC AAGTACTTAG
  AAAATAGTGC AAAACACACA GAAGGCAGTC AACCAATGCT TGCTAAATGT ACTAAGAACT
  TTTTCCAGTG TTGGATTTTT GAATGAGTAA ATCTCATGTC CAGGAGTCTG TTCAGCTAGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45231257	mCV27577155	ABI	CRAMUS_MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs33055343					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66086043 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11703	CpG island 11703	535 bp proximal
Rr397014	regulatory region 397014	790 bp upstream
Rr558173	regulatory region 558173	59 bp proximal
Rr558174	regulatory region 558174	696 bp proximal
Rr558175	regulatory region 558175	883 bp proximal
Rr558176	regulatory region 558176	1356 bp proximal
Tssr24377	transcription start site region 24377	877 bp downstream
Ttc21b	tetratricopeptide repeat domain 21B	within coordinates