rs33054375 SNP Detail

Summary

• ID
  rs33054375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154414246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGCGCC CTGGAAAGGA
  GCGAGCTGTG CCTTGTGGGA GTCTGAGCTG CGGTGCATTG TGGGAGTCTG AGCTGACAGG
  GCTTCCCCGA GGGCTGTACA CACAGACGGA CCCTGCAGCA GGGATTCTGT CTCCGTGGTG
  TATTTTTTTC TGCATCCATG TGCATCCATG CAGTGTGTGT TTAGTATAAG TGCATGTGTG
  Y
  GCTCAGGTAT ATGAGCACAC ATATGCAAAA CAGTCGTCAG AACGCCTTTG GGCGCTTATC
  TGGATCTCGG AGGCACACAC ACAGCACTTG AAAACCGTGT TTGTGCGAGT ATATACTTTC
  ATATTTGGGA AATGAGCCCT GCTAGGTGAC AACACAACAC ACAAGATTTC CAGCGCCAGT
  GCTGTGAGAC AGGCTGCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766063	NES10931760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33054375					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766063	NES10931760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154414246 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15438	CpG island 15438			884 bp distal
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606136	regulatory region 606136			within coordinates
Rr606137	regulatory region 606137			1174 bp distal
Rr606138	regulatory region 606138			717 bp distal
Rr606139	regulatory region 606139			767 bp proximal
Rr606140	regulatory region 606140			1305 bp proximal