rs33052404 SNP Detail

Summary

• ID
  rs33052404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154413504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCTTGCC TCAGAGGAGA
  GATCAAGTGC CGTGGGAGCT GTGTCCACTG TGGAGTCCCC GAGGTCACCT GACTACCCAG
  CTGGAGAGTT CAGACATGTC CTAGGATTCT ATTCTTAGAG ACATCTAGGC CAGGTTTTAA
  CTATCCCTGA GCTCTATACT GGAGGGAGTA AGATGCTGAG ATAGTGCGAG GTGACATTCT
  Y
  TATTCAGCCT CAAGAGGGCA GCCTTGAGCC ACCGAAAGAT ACAGAAAGCT GTTCTGGCTG
  GTTACCCTGA GATGGGAAAG CAGCCCTCTG CTGACTGAAG ACCCTGAACC AGCCCCATTT
  CACTTGGGGG CTCGTGGTGG CTATCTAATG CTCTTAGTAA CCCTGGAGGT CAGGTGGGGG
  GATTTTGGGA CTGTGGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766036	NES10931750	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33052404					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766036	NES10931750	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154413504 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15438	CpG island 15438			142 bp distal
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606136	regulatory region 606136			within coordinates
Rr606137	regulatory region 606137			432 bp distal
Rr606138	regulatory region 606138			4 bp proximal
Rr606139	regulatory region 606139			1509 bp proximal