rs33051290 SNP Detail

Summary

• ID
  rs33051290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154413469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCGGTCA CAGTACTTGC
  ACCTGGAAAA CAGGTGCGCC TTGCCTCAGA GGAGAGATCA AGTGCCGTGG GAGCTGTGTC
  CACTGTGGAG TCCCCGAGGT CACCTGACTA CCCAGCTGGA GAGTTCAGAC ATGTCCTAGG
  ATTCTATTCT TAGAGACATC TAGGCCAGGT TTTAACTATC CCTGAGCTCT ATACTGGAGG
  R
  AGTAAGATGC TGAGATAGTG CGAGGTGACA TTCTTTATTC AGCCTCAAGA GGGCAGCCTT
  GAGCCACCGA AAGATACAGA AAGCTGTTCT GGCTGGTTAC CCTGAGATGG GAAAGCAGCC
  CTCTGCTGAC TGAAGACCCT GAACCAGCCC CATTTCACTT GGGGGCTCGT GGTGGCTATC
  TAATGCTCTT AGTAACCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46766030	NES10931748	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33051290					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46766030	NES10931748	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154413469 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15438	CpG island 15438			107 bp distal
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606136	regulatory region 606136			within coordinates
Rr606137	regulatory region 606137			397 bp distal
Rr606138	regulatory region 606138			39 bp proximal
Rr606139	regulatory region 606139			1544 bp proximal