rs33050752 SNP Detail

Summary

• ID
  rs33050752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127966957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CATACAAACA CCAAAATGAC CAAGATGGCC CAACATTGAT TGGGACGGCA GGTCGCAACA
  CTTGTTCTGC AAGAAAAGGC TACGTCCTAC TTACTGCCAG CCTGGATGCA GGTTGGGTAG
  CCCATTAATA GAGTTTCCTT AATCTCGTGT GGGGAGTGGG ACGTTCCATT TCCAGAGCAG
  CTTTTTTGGG CCGCCGCTAT GAGAGAAGGG GCTGGGGGTG GGGATGCACA TGGCGCCATT
  GACTTCCAGA CTTCTGTTGG AATCACAAAG GCCTCAGGAA GATCAAGGGA TTTTTTTTTC
  R
  ACCCCCTTAT GGTTTTCCCA GCTCGGCCTG AACTCCGCTG CTCCATGGTC GCCAGCATCG
  GCGGACCGAT GGATAGACAG TTCCTGGCGT ACACTGTGAG CCCCAAACAT TTCGAGGCTC
  CCAACACCGC TCATGGCACA ACCGTCTTTC CTTGGTAGCC CCCCTCCTTT TCCTTGTAGT
  TATTCTTTTC CAGCTAACTT TCTCATTCCC CTATTTTATA TGCTTGTCGT GCCCGCCCAT
  CGCTCCCTGA AGCTTCCCGC TTCTCTTGTC TCTCAACTGT CCTTCTCACC ACCACCTCTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45231108	mCV22674685	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33050752					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127966957 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	mRNA-UTR
Bcl2l11	BCL2 like 11	1001 bp upstream
Cpgi12233	CpG island 12233	1820 bp distal
Cpgi12234	CpG island 12234	1081 bp distal
Cpgi12235	CpG island 12235	within coordinates
Gm74510	predicted gene, 74510	1180 bp upstream
Gm75592	predicted gene, 75592	within coordinates
Rr564648	regulatory region 564648	490 bp distal
Rr564650	regulatory region 564650	1734 bp distal
Rr564651	regulatory region 564651	511 bp proximal
Rr564652	regulatory region 564652	1116 bp proximal
Rr564653	regulatory region 564653	1191 bp proximal
Tssr20042	transcription start site region 20042	993 bp upstream