rs33048323 SNP Detail

Summary

• ID
  rs33048323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119452490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCAAAAACT GAGCCCCTAG CTGGGCACTT GGTGGATTGC TGGAGACTAG GAGTGATGAC
  ATGTTAACCC GAAATCTTCT CTGCAGACAG CTTGTGGGAA GTAGGACAGG CGGGCTTTTC
  CAGCTTGTAC AGGGCAAGCA AGCAGCTTGT ATTTATACAC TTAGAGTTGT GCGTGTATAG
  CATTTTTTTT AAGGCCATGA ATTTGAGAAA GAGCAAGGCC AGGTACATGG GTACATGGAG
  AGAAGTTGGA GGAAAGAGAT GGGCTCTTGG GAGATAGGGT GGGGAGGGCA TTATGTGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTATAAAAT GAGATTTATT TATTTATTTT ATGTATATGA
  GTATACTGTA GCTGTGTCTT CAGACACACC AGATCCCATT ACAGATGATT GTAAGCCACC
  ATGTGGTTGC TGGGAATTGA ACTCAGGACC TCTGGAAAAG CAGTCAGTGC TCTTAACCAC
  TGAGCCATCT CTCCAGCCGC ATGTAAATAT ATTTTAATTA AAAATTTTTT AAACCAGGTT
  GGGTTGGCAC ATGCCTTTAA TCTTAGCACT CAGGAGGCAG AGGTAGGCAG AGCTAGTTCC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45230743	mCV22554070	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss147337236	ENSMUSSNP2526780	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320476359	CHEV_2_119447745	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33048323					SNP	G	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119452490 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr563553	regulatory region 563553			1367 bp distal
Rr563554	regulatory region 563554			1058 bp distal