rs33044905 SNP Detail

Summary

• ID
  rs33044905
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189857629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAATGA CAAGTCATAC
  CAAACGGGCC TTGCTGAGAG AGGCCATGTG GCTGGCTGTA GGTCTGCAGC CAAATGCTAA
  CACGTACAAA GATCAGCGGT ACAAACTGTG TGCTCTCTCG CTGGCTGCTG CCAACAGAAC
  CTCCATGGGG ACCTGTCTTC CTTCAACAAC AAACCTAGAG CTACGGGAGA CAGAGAGCTC
  R
  GAAACACACA GGTGTGAGTG CTACAAAGGG CGGGTAAGTC AGATGCCCCA CCCACTCCAA
  GGACACGCCC AACCCCACCT GGGCCTAGCC TATCCACAGG CAGCCAGGGC CAGGGAGATG
  TCCCACCCAC TCCAAGGACA CACCCAACTC CACCTGGGCC TAGCCTATCC CCAAGAAGTC
  AGGGCCAGGG AGGAGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46765146	NES10646929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33044905					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46765146	NES10646929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189857629 () rs orientation: forward

Symbol	Name	Function Class
Gm69899	predicted gene, 69899	within coordinates
Prox1	prospero homeobox 1	Intron
Rr425913	regulatory region 425913	1742 bp distal
Rr425914	regulatory region 425914	66 bp distal
Rr425915	regulatory region 425915	within coordinates
Rr425916	regulatory region 425916	1845 bp proximal