rs33042065 SNP Detail

Summary

• ID
  rs33042065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154266060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCACCCCCGA AGTCTCAACA CCAGATGAAG GGTGGACTCC TTTTGAATGT TGTAGTCAGA
  CAAAGTCCGG CCATCTTCCA GCTGCTTACC AGCAAAGATC AGCCTCTGCT GATCAGGAGG
  AATGCCTTCC TTATCCTGGA TCTTGGCCTT TACATTTTCT ATAGTGTCCG AGGGTTCAAC
  CTCGAGCGTG ATGGTTTTCC CCGTAAGGGT CTTCACAAAG ATCTGCATGG TGGCGGCGGC
  TCCACCCACG ATGGCGGATC GGAAAGGCCC TGGTCCCTCT TTATGTCTAC TTTGCAGCTT
  R
  TCTCTACAAA CCTGGAAGTT TCACAGTCTA GCCCAGGGGC ATGTGCGAAG CTAGATCTGT
  GTTCATTTCC TAGAGCTGTT GTGACAAAGT CAGGTGGCCT AAAAACAGCT CTGGAGGAGC
  CTTGGGAGAT GGCTCAGTTG GTGAAGTATT TGTCATGCAA GCATTAGAAA CTTGTGTTCA
  GAGCCCCAGA ACTCACATAA AAAATGCTAG GCAGGCATAG CATTGCATAC CTGCAACTCA
  GTGCTGAGGA GACAAAGCCA GTTGGGTCCC TAGGGTTTGC TGGCCAGCCA GGCTAGGCAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45657029	mCV23470459	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					G		A
ss46763912	NES10935057	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	G	G	A		A	A	A	G		A	A	G	A		A
ss321438581	CHEV_4_153555712	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33042065					SNP	A	A	A	A	G	G	A	G	A	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763912	NES10935057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154266060 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr377451	regulatory region 377451	233 bp downstream
Rr606100	regulatory region 606100	167 bp distal