rs33040813 SNP Detail

Summary

• ID
  rs33040813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:79957313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGCAGAT TTTAAGCTTG
  GAGCTTCTTT CTTGCTTTGA CAAGCCTCAG CCAGGAACTC TGAGAATGTC TTAAGTCAAA
  GTGCAAGGAA AAGGAATGAA CCGAAATGCA AATTTCTTCC TGCTTGAATA CAAAAGCTCT
  GAGTCACTTC AGTCAGTAAG AATGGCTTTA AAACACTAAA CTGGCTGGAG ATCATTAAGT
  R
  ATTCTGTGTA GCAATCGGTC CAAAAGAACA CAGCGTGTGC ACACAGAGAT GTAATCCACT
  GTCAACTCAG AAGCTCTGCT GCTGAGAGAC CTCATCACCC CTCTTAGAAA CGGCCATCAA
  ACGACAAGGT GAAAAGTTAG AGAACTTTTC TCAAAAATGT TGAGTAAACA CGGAATCAAT
  TTTCTAGTTG TTTGAAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45229363	mCV22743850	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146789703	ENSMUSSNP2985636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33040813					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79957313 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11847	CpG island 11847			1989 bp proximal
Pde1a	phosphodiesterase 1A, calmodulin-dependent			Intron
				Noncoding-Transcript-Variant
Rr373421	regulatory region 373421			within coordinates
Rr560060	regulatory region 560060			within coordinates
Rr560061	regulatory region 560061			1960 bp proximal
Tssr24917	transcription start site region 24917			1971 bp downstream