rs33040425 SNP Detail

Summary

• ID
  rs33040425
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154265064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGACCTGG ATGAAGCTAA GGCGACTGCT TAGGCCATTC
  CTTCATGGCT CCTGCTACCG CCTTTTAATG GGCGCTTGGT GTTGGTGTGT GGCCTCACCG
  M
  AGACAGGTGA GGCTATGCTG ACATCATCAG CCTGAGAGGC CAGAGGGAGT TCAAGAGTCT
  CTGTGTGAGA GAGTCTTTCC TGACATGTCA GACGGACATC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss46763888	NES10935049	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs33040425					SNP	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763888	NES10935049	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154265064 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr377451	regulatory region 377451	within coordinates
Rr606100	regulatory region 606100	387 bp proximal