rs33038576 SNP Detail

Summary

• ID
  rs33038576
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154261287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACTCCTG GGTCACGTCA
  CATACCCCTA TGTAGTCCGA GGATGCCAGG GAGACTCTGA GGTACCAGGA GAGAGGGAGG
  ATGTTCTGAG GCCTGAAGTT TGGGGACAAG CCTGAGCTCC AACAAGACCT GTAAGTCCCC
  TCTGCCCTGA GCTCCTGGGT TGTCCACAGG GGACAGCAGA TTCTGCCTAC CTTGAAGCTT
  M
  TTAGGGACAG CCCCATGCAG CTCAGGATCC CGGTGGATGA TGTGGTGGCT CTCATTCCTT
  CTTAGTCTCC TTGTCCTGGA GTCCCAAGTG GATGCCAGGT GGGCAAATGA GCTATGGTCT
  AGCATGGGAT AGTTGGATAC CTAGTATAGG TGTAGAGGCA TAGCTGTTGC CAGTAGAGAA
  GTTGAATGTC ATTGTCCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46763768	NES10935153	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33038576					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763768	NES10935153	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154261287 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr606099	regulatory region 606099	276 bp proximal