rs33036279 SNP Detail

Summary

• ID
  rs33036279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154260463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTGGTCC GTGCACTTCC
  CTGTGGGGGT GGCTTCCCAC CCAGCAGAGC CAGGGAAAGA GCAAAAATAA AGACCTCTGG
  GTCAGAACAT CCGTCTGGGG GTGGCTGGTC TGCGGCCAGA GCTGATGGTT GGGGTGGTCT
  CCGTCTCTTA AGTGCTGAAC TTTGGACAGC ACCCAGCAGT CGCTGTGATG AGCGAGGCCC
  Y
  GTAGGAGTAT GGGGGTAGAG GCAGAGGCCG GAGGCAAGGC CCCTGATGGA GCAGGGACCT
  CAGCTAGGGT AGGAGGAATG GGTGACCCCT GCTTACTCTG TGCCCTGAAG AGAGAGAGGG
  GGAGGGAGGG GCTGTGTGTA GAGGATTGCC AGGTTTTTTG TAAGTACGCA CCAGATTGGA
  AAGCTACTCT GGTCTGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46763738	NES10935143	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C
ss148098946	ENSMUSSNP4998908	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33036279					SNP	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763738	NES10935143	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154260463 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr606099	regulatory region 606099	1100 bp proximal