rs33035378 SNP Detail

Summary

• ID
  rs33035378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154259681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAAGGCT GAGGAGGGCT
  TTCCCTGTGT GGGGACTACT GCCCTGCGCA AAACCCTGCC CTGGCTTTGT CCCCATACTC
  TTAGCCTGGG ATCCTCTGCT CACAACAGGC CTAAAAGTCT GGGTTCAATA TTTTTAGCTG
  GCCATCTATC TGAGAGGCAC AGCACAGCTC AGGAAGAGGC TGGGTCTTGG GTCCAGGTGC
  Y
  AGCCATGTCT GATTAGCAAG TGGTCTTAAA ACAATTCGGG GAGTCACTGC CACCTTCTTT
  CTGGTGGTGA AAGGGGCACC TCATGGGGTG ATGCCTAGAG GGTGCCTGGT ATCAGCAAGG
  CAGAGGGTGA GGGGTGGGGG TCTGTCCCCT GGGGAACTGA CTCTGAAGTG ACAAAAAAAA
  CTTTCCCATC AGGTTCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46763726	NES10935139	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33035378					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46763726	NES10935139	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154259681 () rs orientation: forward

Symbol	Name	Function Class
Megf6	multiple EGF-like-domains 6	Intron
Rr606099	regulatory region 606099	1882 bp proximal