rs33033543 SNP Detail

Summary

• ID
  rs33033543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128000647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTCAGTA AATATTTGTT
  GTGAATGTAA ACAAGGGAGG GCTTTTCTCT TTTTAATGTA CAGATCCTAG GAACAGAGAA
  ATATGCAAGA GAGGTGTTTA CATGTGGCGT GTTAATTTTT TTAAACCCAC TTTCTTTGAT
  AACTGTTTTT GGGGTTTTTT TTTTTTGTCT CATTTTCTTT CAGAAAGTAA AGCTTTTTAG
  M
  CAATTTATGG ATGATTTTTA TACTCAAATT CTTAACCCAC TACCTACTCA GAGGATTCCA
  TAACCCTGCA GTGGGAACTG AGCCAGCTGA TTTATAAGGC TGCCTTAGTT TATTTTTAGA
  AATTACTGTA CAGAATTTTT TAAACAGGAA GAGTATGGTG TTGCCCTCTC TCCTCTGCCA
  TGGCCTCTTT GAGTTTCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45228731	mCV23908573	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
ss147553431	ENSMUSSNP877246	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		C
ss320501665	CHEV_2_127984463	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33033543					SNP	C	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128000647 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l11	BCL2 like 11	mRNA-UTR
Rr564663	regulatory region 564663	1822 bp distal
Rr564664	regulatory region 564664	1325 bp distal
Rr564665	regulatory region 564665	251 bp proximal
Tssr639	transcription start site region 639	537 bp upstream
Tssr20049	transcription start site region 20049	30 bp downstream
Tssr20050	transcription start site region 20050	558 bp upstream