rs33030966 SNP Detail

Summary

• ID
  rs33030966
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136036975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCAGCAC TGGAGTTTAC
  AGGTGCATGC GGTCACGCCA GGCTTTTTAC TCAAGTGGAT GGAGATTCAC AGTCAGGTTT
  TTTTTTTGTG GGGGGGCGGG GTTTCGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT
  GGAACTCACT CTGTAGACCA GGCTGGCCTG GAACTCAGAA ATCCGCCTGA CTGCCTCCCG
  W
  GTGCTGGGAT TAAAGGCATG CGCCACCACT GCCGGGCCAC AGTCAGGATT TTAAACTTGC
  ATTTGAGCCG TCTCTCCAGC CCCTAGGACA GGCTTTACAA TTTACAGTTC TGGAAGCAGG
  GAAGTCCAAC ATTGAGAGCA CGCGGGGATA AGGGCCGTCT CCCTACGCTG GAAGCGCAAA
  AGATGCAGAG AAGATCTAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45728537	mCV22562763	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss147565113	ENSMUSSNP6581148	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33030966					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136036975 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15109	CpG island 15109	620 bp proximal
Gm13013	predicted gene 13013	1778 bp upstream
Hnrnpr	heterogeneous nuclear ribonucleoprotein R	1278 bp upstream
Rr367756	regulatory region 367756	within coordinates
Rr602347	regulatory region 602347	788 bp proximal
Rr602348	regulatory region 602348	1372 bp proximal
Tssr39700	transcription start site region 39700	1272 bp upstream
Tssr39701	transcription start site region 39701	1288 bp upstream
Tssr39702	transcription start site region 39702	1327 bp upstream