rs33030843 SNP Detail

Summary

• ID
  rs33030843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:149224058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCTGGA ACTCACTTTG
  TAGACCAGGC TGTCCTGGAA CTCAGAAATC CACCTGCCTC TCCCTCCCAA GTGCTGGGAT
  TAAAGGTGTG CACCACCACT GCGGCGAGGT CTGTTAAGAA ATACCACAAC CTATTGTAGA
  TTCGGTTTAT TATGTTAATT GTTTTTAATT ACATAGGAAT TTGTACATCT ATATGTAAGG
  Y
  ATCGTGGGTC CCTGCCCCCA GTTGGCTCTA ATTAGTAAAT AAAGTTGTCA GCAAAGATTT
  AAAACAAAGA TTTAAAATCA CTACAAGATT TAAAATCACT ACAAGAACAA AGATTTAAAA
  TCACTACAAG GGGAAGCAGG AGGACCAGCC CTGAGAGTTG CAGGAGAGAG CACATAGCCA
  TGTAAGAGCC AGGGGAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45728174	mCV22769543	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss148028614	ENSMUSSNP1194050	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321425020	CHEV_4_148513710	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33030843					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149224058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15320	CpG island 15320	1780 bp distal
Rr398863	regulatory region 398863	1796 bp downstream
Rr604840	regulatory region 604840	1558 bp distal
Rr604841	regulatory region 604841	1945 bp distal
Tssr44624	transcription start site region 44624	1976 bp upstream