rs33028589 SNP Detail

Summary

• ID
  rs33028589
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:151983070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTTACT ATTTTTATTT
  ATTCTATGAC AATTCATATA TGTGTGAGAT GTGTGTGTGT GTGTGTGTGT ATGTGTGTGT
  GTGTGTGATT TGCAGTGCTT TGGATTGAAG TCAGAGCATT GTGAGTGCTA CACAAGCACT
  CTTACCACTG AGTTCAGTGC ACAGCCCTCC TTTTCTACTT AATTTTGTTA CTATAAAGTT
  W
  AAAAAAAAAT CTTAAAAAGG CAAGCAAGCA TTTCTTTCCC CCAAAGATGA TGGTGATTGA
  GGTGAGGACA AGGGAGCTTT GACAGAGGGG CCTGGATGGG AAGCCAAGCT CTGTACTGAG
  CCTCTTCCAG GAACCTGTCT ATAAACGGAA TCCTTGTCTC CGCATCCCGC CTGCTGCTGT
  CCCTCGAATC TCCTGCTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45728512	mCV24613451	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss148078198	ENSMUSSNP174941	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33028589					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151983070 () rs orientation: forward

Symbol	Name	Function Class
Rr605658	regulatory region 605658	1152 bp distal
Rr605659	regulatory region 605659	86 bp proximal
Rr605660	regulatory region 605660	1267 bp proximal
Rr605661	regulatory region 605661	1575 bp proximal
Rr605662	regulatory region 605662	1729 bp proximal