rs33027444 SNP Detail

Summary

• ID
  rs33027444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154107150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAAGACA GAGCCAAACA GGAGGAGCTG TGGAGGAGGG
  TCAGGCCTGG AACAAGTCAT GCCTGGCTGG GCAGTGCTAG TGGAGAGAGT CTGTCACCCA
  Y
  TGTTCCTTCA GCAGTGATTT GTCTACAGTC TCTAAGGAGT GGGGGCTGGT GGGGAGGCAG
  CCGGTAGGGC ACACAGCTTC TCTCCGGGCC ATCCCTGAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761911	NES10939560	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33027444					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761911	NES10939560	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154107150 () rs orientation: forward

Symbol	Name	Function Class
Lrrc47	leucine rich repeat containing 47	1181 bp downstream
Rr606054	regulatory region 606054	1615 bp distal
Rr606055	regulatory region 606055	1652 bp proximal
Smim1	small integral membrane protein 1	mRNA-UTR
Tssr44852	transcription start site region 44852	1072 bp downstream
Tssr44853	transcription start site region 44853	1094 bp downstream