rs33027129 SNP Detail

Summary

• ID
  rs33027129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189667840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACACAC ACTCAGACAC
  ACACACAGAC ACACATATAC ACAGATACAC ACATACACAG ATACACACAT AGACATACAC
  AGACTCTCTC TCTCTCTCTC TCTCTCTCTC TCACACACAC ACACACACAC ACACACACAT
  GGTGTTATAG GCATGACAAC ATGCCTTACC TTAACATAGG TGCTAGGAAT TGAAACCCAG
  Y
  TCCCACATTC TTGCAGCAGA CACATTGCCC ACTGTGTCAT CTGCCCAGCC CCAGAAACCA
  ATCTGGTAGA AGGGACAAAT ATGGGAACAG GGTTCCCAAT TTGAGACAGC TGCAACAATC
  CAAGCAGGAA GTGACAATGA GCAGAGGCAG GTAGGACTGT TGCTGTGATC GTGGTCTGTC
  TGTACTTGGA CAGCAGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46762440	NES10655292	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33027129					SNP	T	T	T	T	T	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46762440	NES10655292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189667840 () rs orientation: forward

Symbol	Name	Function Class
Rr425891	regulatory region 425891	1786 bp distal
Rr425892	regulatory region 425892	252 bp proximal