rs33026698 SNP Detail

Summary

• ID
  rs33026698
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154106833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGACCAC TGAAGCTTAG
  GTCGGGCCTA ACCAGGAGCC TCTTAGGATG AGGAGGCCAG CCATACCAGC CTCGCTGGCC
  AGGGAGAAGC AGGGGTTGGC TTCTGGCCTC CTTCCTTTGG CCACTGATAG CAGCAGCCCC
  TGTGCCTGCC ACCCTCTCAG GTCAGTGTGC AGACCTCACA GTTTTCTAGC CACAGCCCGC
  M
  AGCCTTGCGC CAATTCACAG CATACTGGGA ACAAGGTGTG GTCCAGAGAA GTTCTACATG
  GGCCACTGGA GAGGGGACCA AAGTCCCCAT CGAGTCACAG TGCCCTTGTT CAGCGTCATG
  TCCTCACATG GTCCAGTAAG GAGGGAACAG GTCCAGCCAC ATCCTGACCC TTGGGTCTCT
  GTGTTCTTGG GAGAAGGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46761905	NES10939557	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33026698					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46761905	NES10939557	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154106833 () rs orientation: forward

Symbol	Name	Function Class
Lrrc47	leucine rich repeat containing 47	864 bp downstream
Rr606053	regulatory region 606053	1888 bp distal
Rr606054	regulatory region 606054	1298 bp distal
Rr606055	regulatory region 606055	1969 bp proximal
Smim1	small integral membrane protein 1	mRNA-UTR
Tssr44852	transcription start site region 44852	1389 bp downstream
Tssr44853	transcription start site region 44853	1411 bp downstream