rs33023169 SNP Detail

Summary

• ID
  rs33023169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATGAAA GGAACTGTAA
  TAGAAGGTGG CTGTTTCTTC TTTGACCGGC CAGAAGAGAC AGAGCCTGGG CTTTGAATCT
  AAGGCTCATC TCGTTCTGGG GCACTCACAT TTACACAAGA GCTGGAAGGA ACCAGTTTGT
  CTGTTTTGTT CCCCCCTCCC CGCAAGCGTA TTTTTTATTT CATTCATATG AGTGTTTTGC
  Y
  TGTGTGCCTG TGCACCACAC GGATGCAGTG CCGGTGGATG CCAGCAGAGG GCACTGGATC
  CAGTCAATCC AGATTTACAG ACCGCTGTGA GCCACTGTGT GGGTGCTGGG AACTGAACCC
  AGCTCCTCTA GAAGAGCAGC GGCGCTCTTA CCCGCGGGGT CACCTCATCC CTCACCCTTT
  CATGTAAAGT GCGCTGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45727602	mCV22590570	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147459906	ENSMUSSNP828877	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321317080	CHEV_4_129781027	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33023169					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997576 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1672 bp downstream
Rr600439	regulatory region 600439	1215 bp distal
Rr600440	regulatory region 600440	716 bp distal
Rr600441	regulatory region 600441	37 bp proximal
Rr600442	regulatory region 600442	719 bp proximal
Tssr39229	transcription start site region 39229	1103 bp upstream