rs33022286 SNP Detail

Summary

• ID
  rs33022286
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:95786090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTACCTAA TTAAAAGCAT
  TGACACTCAG CAAAGCTTGT GAGAGAATTT GGGTGAACAG CTGGGAGTTG CTCTCCATGC
  CAACAGCTGC TGCCTCTCAG CAGGCAGGCA ACAAGGAGTC TGGAGCCCTG TGGGGAGGAC
  AGGGAGGGAG CCTTGAAGAC AGATGAAAAA ATTTGGCCAC AGGGAAACCA TCTGAGCAGG
  R
  TGCACCCTGC ATCACCATGC CTTCTGCCTA ATGAAATAAC TAATGGGAAA GAGGGCAAGC
  AGGAGAGGAA GGCATAGAGT CTAGCTAGCT CACTGGCAAA CCACTGTCAC CCATGCCCAG
  ATTACAGTAT TCACCCTGCC AAAGTGGAGA AGCCATGGGT TGGTACAAGG CATATCTTTT
  AAAACAGCCT CATTCAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45726668	mCV22849260	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss321216054	CHEV_4_95564544	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33022286					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95786090 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Fggy	FGGY carbohydrate kinase domain containing			Intron
				Noncoding-Transcript-Variant
Rr376869	regulatory region 376869			1372 bp upstream
Rr595486	regulatory region 595486			814 bp distal
Rr595487	regulatory region 595487			524 bp distal
Rr595488	regulatory region 595488			within coordinates
Rr595489	regulatory region 595489			368 bp distal