rs33021741 SNP Detail

Summary

• ID
  rs33021741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153079288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAGAGACAA CAACTCATAC ACTCAGATAT GAGGCGTTTT
  CATGTGAAAG AGCAATGATG GTGTATCTGG GAATTGGTTA CAAGAATCTG GGGAGAGCTT
  Y
  AACTGCACAA GCTAGCTGTA GGCCATGGAA TGCTTGCTCA GCTAATTAGC ACCTGCTGCT
  CACAGAGACC ATTCATCCAA CAGACTGGCC ATGAACGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45227020	mCV23160513	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss147988372	ENSMUSSNP1901102	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33021741					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153079288 () rs orientation: forward

Symbol	Name	Function Class
Plagl2	pleiomorphic adenoma gene-like 2	Intron
Rr567587	regulatory region 567587	1094 bp proximal
Rr567588	regulatory region 567588	1588 bp proximal
Tssr26894	transcription start site region 26894	549 bp downstream