rs33020398 SNP Detail

Summary

• ID
  rs33020398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180428107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAG GGTAGGCCTG GCTCACAGTT
  Y
  CCTCCAGGAG GGAGGATTTC CAGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45226564	mCV23365207	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148393286	ENSMUSSNP6434228	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320632333	CHEV_2_180521019	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs33020398					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180428107 () rs orientation: forward

Symbol	Name	Function Class
Gm75401	predicted gene, 75401	1859 bp downstream
Rr572845	regulatory region 572845	268 bp proximal
Rr572846	regulatory region 572846	532 bp proximal
Rr572847	regulatory region 572847	615 bp proximal
Rr572848	regulatory region 572848	1666 bp proximal