rs33019937 SNP Detail

Summary

• ID
  rs33019937
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:101848523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACAGTGAAT ATGTAAAAAG CCACTAAAGC AGGCTTAGTA
  GAGGAGCTGG AGGTGAGCGT ACAAGCCAGT GAACACAGCA GAAGGAACTG ACACTTTGCA
  S
  TTCCCACTGA GACCCTCCAT TTCATGAGTG AATCAACAAC CCAATATGAC CAAAACATTC
  CAATATTACT TGCTGAGAAA GGAGGAAAAC TCTATCAGCA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss47245721	NES11403478	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	G	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs33019937					SNP	C	C	C	C	G	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47245721	NES11403478	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:101848523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Trip11	thyroid hormone receptor interactor 11			Intron
				Noncoding-Transcript-Variant
Tssr117378	transcription start site region 117378			1714 bp upstream