rs33017735 SNP Detail

Summary

• ID
  rs33017735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127673560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACGGTA GCCGGCTGCA GCTTGCACGT CTACTCGAGT
  GACCCGGGGG CTACCGCCTT GGCTGAGGCC TGGTGCAGCG AACCCGCTGA GGAAGCGGCG
  Y
  TGAGGAGAAA GCGCGCCTGA GGGACCCGGA CTCTAACCGT CCCGACCGGC CCACCTCACC
  GCACCTGACC GACACTTACC GAAAGACATT TTCTAGGTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45226163	mCV22597290	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss147542383	ENSMUSSNP4263197	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33017735					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127673560 () rs orientation: forward

Symbol	Name	Function Class
Bub1	BUB1, mitotic checkpoint serine/threonine kinase	Intron
Cpgi12232	CpG island 12232	within coordinates
Rr397289	regulatory region 397289	135 bp upstream
Rr564601	regulatory region 564601	within coordinates
Rr564602	regulatory region 564602	209 bp proximal
Rr564603	regulatory region 564603	1330 bp proximal
Tssr26147	transcription start site region 26147	177 bp downstream