rs33017591 SNP Detail

Summary

• ID
  rs33017591
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150133974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTAGGC CGAGTACTTG
  AGTGGTAATT ACAGAGAACT GCTGGGTTGT GCAGCCCTGG GAAGGCGAAG AATTTCCAAG
  AAGTAACAAA ATGTCCTTTG ATATCATCAT CTCTGGAGAG AAAGGGTTCC TTTGGGGGAG
  TTTTGCTTGG GCCGATTTTT TTCTTCTTTG ATCTTTGTTG GGCGTGAAGA AGGCTCTGAC
  K
  CCTTTGGGCT GTGCTCACCA ATCTGGGAGT TGGGCTAAAG CTGACGACTC CCAGGTCCTC
  TTTCCCACCC ATAAATGGGG GCACTGACCC TGCCACCCAG ACTTGTACTG AGAAATTTAT
  TAGGCAGGAA AAAAAAGTGC TTGGGTCACT AAAGCTGTGT TCTGAAAGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45727027	mCV23448481	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33017591					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150133974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	196 bp distal
Gm13067	predicted gene 13067	within coordinates
Gm69230	predicted gene, 69230	404 bp upstream
Rr377414	regulatory region 377414	within coordinates
Rr605155	regulatory region 605155	1268 bp distal
Rr605156	regulatory region 605156	503 bp distal
Rr605157	regulatory region 605157	within coordinates
Tssr40363	transcription start site region 40363	1273 bp downstream
Tssr40364	transcription start site region 40364	1225 bp downstream
Tssr40365	transcription start site region 40365	326 bp downstream