rs33016443 SNP Detail

Summary

• ID
  rs33016443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59851745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA CAAGAATTAT TCTAGATAGG
  Y
  GTTTGCATGA TAAAACCAGC AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45726800	mCV24717401	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss146403653	ENSMUSSNP4921179	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss321141566	CHEV_4_59864617	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33016443					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59851745 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	572 bp downstream
Rr593160	regulatory region 593160	1050 bp distal
Rr593161	regulatory region 593161	1308 bp distal
Rr593162	regulatory region 593162	95 bp distal
Snx30	sorting nexin family member 30	Intron