rs33010089 SNP Detail

Summary

• ID
  rs33010089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:153991632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAATAG GAAGTGTGTT
  AGGAGGCAAA GGCATGAGGA GAGCATTGGT TTGGGGGCAG TCAATGTGAG GAAGCAAGGA
  GAATTGTTGG AACGAGAGTG TGTGCTGGCT TCTCTAACTG CTTAGACTTA AAGACATCCC
  CAAGTCTGAC AGTGACCTGC CAGAGCCCGC TCTCCCTTCC AGAATGCCTC CATGACAGCA
  R
  CAGCCAAAGA GCAGATCAGT GCCGCTCATC AAGCCTGTAA TGTATTTGGG TGGGAGGCCT
  GCAGAAAGAA GAGTCCGAAC ACGCTAAAGG GTCTCCTAGG CTTATGCAGA AAACTGGTAG
  AGAAAGATTG AGGCCCTGAG TCTGGAGAAG GGGACATTTA TGTGAGTGCA CCTAAGACTT
  TTTGGTTTTA TCTGCCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46760363	NES10942153	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33010089					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46760363	NES10942153	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:153991632 () rs orientation: forward

Symbol	Name	Function Class
Gm13115	predicted gene 13115	211 bp upstream
Rr606029	regulatory region 606029	385 bp proximal