rs33009979 SNP Detail

Summary

• ID
  rs33009979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117334025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTAGCCCTG GCTGTCCTGG AACTCACTCT GTAGACCAGG
  CTGGTCTTGA CCTCAGAAAT CCGCCTTCCT CTGCCTTCCA GGTGCTGGGA TTAAAGGCAC
  R
  GGCCATCACT GCCTAGCTAT TCACCATCTC TTCTTTCATA GACAAGAAGA TGATATGCAG
  AGAGACAAAA GTAACTCACC CAGAGCCACA TAGCTTGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45725533	mCV24299278	ABI	CRAMUS_MOUSE	f	SNP		A	G	A
ss147289319	ENSMUSSNP2681406	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33009979					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117334025 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598151	regulatory region 598151			within coordinates