rs33009954 SNP Detail

Summary

• ID
  rs33009954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144680914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGTT ACAGAGGATA GGAAATGGGT
  Y
  AAAGAAAACA CTGGAAGTGA TAAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45725622	mCV22761812	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147841595	ENSMUSSNP3487201	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321411042	CHEV_4_144544247	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33009954					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144680914 () rs orientation: forward

Symbol	Name	Function Class
Gm42344	predicted gene, 42344	193 bp upstream
Gm69556	predicted gene, 69556	within coordinates
Rr604273	regulatory region 604273	690 bp distal
Rr604274	regulatory region 604274	1337 bp proximal