rs33009866 SNP Detail

Summary

• ID
  rs33009866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164661470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCAAGCAGTG ACTAGCTGAG CCCTCCACTG CTGGTGTCAG CTTCCCCTTA CATCCTGCAT
  CAGAGCGGGT TGTTGGCAGC AAAAAATGGC AACAGACAGA ATGACAGTAA TTGGGCCTTT
  AGGCCAGGTA TAGTACATAG CTCACTTTTG TAACCGCAGT TCATGGGAGG TAGAGCCAGC
  AAGGCTGTGG CAAGTTCAAG GCCAGCTGGG ACTACATCAT GAGCTCCCTT CCACTCCCCA
  AACTAAAAAA AAAAAAAAAA GAACCAACAC AAATACAAAC AAATAGATAA GCTTGTAGAA
  R
  AAACTAAGGG GTGTTGTAAT AGGGACAGTC TTGAAGGGGG AGCCGAAAGT GCTGTGACTA
  CAGAGTCACT GCACATTCTT CTCCTCACAC TCTAGACGGC TTTGTGGTCT CTAAGAAATG
  TATTGGTCAA TATAAATGGC TACCAGGTCT TATCTTACAA GAGGGGCAAC CAGCACCTTT
  CTCATTGTCA CCTCTACCTT CCCTAGATAT GTGCAGGTGA AATTTGTCTG TATTCGGACG
  CAGTCAAACA GGAAGAAAAC TCGGAAGGTG GACAGGTGTC CAGCGTATCT GCTGCTGCAA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45225230	mCV23739687	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33009866					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164661470 () rs orientation: forward

Symbol	Name	Function Class
Gm75078	predicted gene, 75078	290 bp downstream
Rr569720	regulatory region 569720	1816 bp distal
Rr569721	regulatory region 569721	1451 bp distal
Rr569722	regulatory region 569722	1730 bp distal
Tssr27543	transcription start site region 27543	1545 bp downstream
Zswim3	zinc finger SWIM-type containing 3	Intron