rs33009807 SNP Detail

Summary

• ID
  rs33009807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:123049399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCTTCC CCCCCTTCTT
  TTCTCCATCC ATTCTTCCTT CCCCCCCCCT TCTTTTCTCC ATCCATTCTT CCTTCCCCAT
  AAAAGCAGAA TACCGCAATG CCTAACATAC TGCTGAAACA ACCTGATAGA CCAAAGGCTT
  GGTCCATTCA GGTACCTGCA GAGTATGACT ACAACAGGAA ACTGAATCAT ATGAAAAATA
  R
  ATTACCTATT ATATCTATCA AAGTATGACT GTCACCAGCT CTGTGACCAA CAGAAGGTGA
  CTTAATTGCT CTGTGGGCCA GGTTCCTTAT CTATATCAAT AAAACGATAG AAATACTGGC
  TAAGCCTGGA GCATGTGCAG ACAGACATAC CCACTGCAAG GCTTTGAGGC AAGAAAAGGA
  TATCTTGGAA ACAATGATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45725889	mCV22631175	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147362161	ENSMUSSNP6537302	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321289766	CHEV_4_122832849	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33009807					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:123049399 () rs orientation: forward

Symbol	Name	Function Class
Rr599058	regulatory region 599058	271 bp distal
Rr599059	regulatory region 599059	389 bp distal
Rr599060	regulatory region 599060	within coordinates