rs33007209 SNP Detail

Summary

• ID
  rs33007209
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117331595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCCACTG GATGACTTTT GGGAAGTTCA AAGAGATTCC
  TTGGTGAAAT CATCCTTGCC TTAGTCCTCA TATGACTGGA GCCAGGAAGG AGAAACAACT
  Y
  GATGCACATT GGCTCCTTAG CATCACCTGG GACTTCTTCC ATCTATCTAA AGACAAAGAC
  ATGAGCCGGG TGTGGTGGTA CATGCCTTAA AAACAGCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45724775	mCV24299301	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss147289289	ENSMUSSNP3943132	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss321279637	CHEV_4_117147003	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33007209					SNP	C	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117331595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598150	regulatory region 598150			within coordinates
Rr598151	regulatory region 598151			1651 bp proximal
Tssr42983	transcription start site region 42983			367 bp upstream