rs33006949 SNP Detail

Summary

• ID
  rs33006949
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166491179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAACTTAAAA TCACCGTGGG CAACACCATC CATGGGCTGT GGTGTTGGAC TGACTAACAA
  GCAGAAAGCC AGCTGAGCAC CAGCCTATCT CTCTCTCTCT CTCAGCTTCC TCACATCAGG
  TACAGTGCGA CCACTCCTCT CACATCCCAA CCCCCATCCT ACCCCCTCCC CCATGATGGG
  CTGCACAGAC TCTTCCCACC ATCACACACA CACACACACA CACACACACA CAGAGACTCC
  TCCCACCATC TCTCTCTCTC TCACACATAC ACACACACAC ACACACACAC ACACACACAC
  M
  CCATGATGGT TGCACCCTTG AACTGTGAAC CGCAGCAAAC TCCTCCTGCC TTAAGTAACT
  CTGGTCGAGT CTTGTGTCTC AAGCAGAAGA AAAGCATCCA ATACCCTTGG GTTTTTGTTT
  GTTTGTTTTA AAATCCAGTC TCCTATGTCC TCCATCCTCC CACACTGGAA CCATACTCTC
  AAGCCTGCCC CAGGACCTTT GCATATGCTC TTCCTGTCGC CATGTTTCCC CTCTGATTCT
  GCCCTGAGCC AGTTCCATCT TATTTTCAGG CCTTAAACAC GACTCACCTC TTCCAAGAAG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45224383	mCV22805586	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs33006949					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166491179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			1187 bp proximal