rs33006231 SNP Detail

Summary

• ID
  rs33006231
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71847761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCAG CTCAGGTTTA GTCTCGAAGC
  R
  TCCATTGTTG GCATCTACTT CCTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46221984	mCV24425203	ABI	CRAMUS_MOUSE	f	SNP		A	G			G	A
ss60631382	NES16279525	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A			A	A		G	G	A	G		A
ss145146163	ENSMUSSNP5613507	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				A
ss322703833	CHEV_8_73919016	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33006231					SNP	A	A	G	G	A	G	A	A	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631382	NES16279525	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71847761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310041K03Rik	RIKEN cDNA 2310041K03 gene			1044 bp downstream
Babam1	BRISC and BRCA1 A complex member 1			1744 bp upstream
Cpgi20525	CpG island 20525			1650 bp proximal
Rr400925	regulatory region 400925			1510 bp upstream
Rr665042	regulatory region 665042			1645 bp distal
Rr665043	regulatory region 665043			414 bp proximal
Rr665044	regulatory region 665044			658 bp proximal
Rr665045	regulatory region 665045			1254 bp proximal
Tssr77853	transcription start site region 77853			1736 bp upstream
Tssr81705	transcription start site region 81705			677 bp downstream
Tssr81706	transcription start site region 81706			714 bp downstream
Ushbp1	USH1 protein network component harmonin binding protein 1			Coding-NonSynonymous
				Noncoding-Transcript-Variant