rs33005701 SNP Detail

Summary

• ID
  rs33005701
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58208069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT CAGTTTGCTC ATTTGGAAAA
  W
  GGAGGAATAA TAACATATCA AGGAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45724941	mCV24832997	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss146390725	ENSMUSSNP1985235	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321137359	CHEV_4_58220941	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs33005701					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58208069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14336	CpG island 14336	1419 bp distal
Rr592872	regulatory region 592872	983 bp distal
Rr592873	regulatory region 592873	1406 bp distal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	1473 bp upstream
Tssr41870	transcription start site region 41870	1735 bp upstream
Tssr41871	transcription start site region 41871	1710 bp upstream
Tssr41872	transcription start site region 41872	1549 bp upstream
Tssr41873	transcription start site region 41873	1525 bp upstream
Tssr41874	transcription start site region 41874	1494 bp upstream
Tssr41875	transcription start site region 41875	1482 bp upstream
Tssr41876	transcription start site region 41876	1453 bp upstream
Tssr41877	transcription start site region 41877	1421 bp upstream
Tssr41878	transcription start site region 41878	1396 bp upstream
Tssr41879	transcription start site region 41879	1372 bp upstream
Tssr41880	transcription start site region 41880	1279 bp upstream