rs33005195 SNP Detail

Summary

• ID
  rs33005195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101293168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTGTGTG GGAAGCCAGT
  TCTGGGCTCC ATTCAAGATA CATGGGGTGG AAGTGGGTCA TGCGTAGGAC ACTATCTGCT
  GGCATTTTTC AGAAAACATC CTGACAGGAA CATGGCATTG GAAAGCCTCT CTGTGAAGAC
  ACATTGCCCT TTGTTGATGA GAGAACTACT TGTTTTATAT GAGTGATCAT ATCAGAGGAG
  Y
  TCCAGTCTTT CTGGAACTTT CCACCAATTC TTAGCCGGTG AACAGGCCAC CTCTTTGTGA
  AACCGAGAAA GAGATGTTTG TTTCTTGTGC CTTTCTCCTT CCTGGTGTCT CTGTTTATCT
  CTTCCCAATC CTAAACACTA AATTTATATT CTACTCTTGG CACAGTGTGT GCTCAGGAAA
  GTCCTAAAAG TGTACAGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45224903	mCV24390211	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147073733	ENSMUSSNP1812918	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320428359	CHEV_2_101302980	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33005195					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101293168 () rs orientation: forward

Symbol	Name	Function Class
Rr561500	regulatory region 561500	45 bp distal
Rr561501	regulatory region 561501	1654 bp proximal