rs33004426 SNP Detail

Summary

• ID
  rs33004426
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119117994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC AAAACATCAC AGATGCCAGT
  K
  GGGGGTGGGG TTGGGGGTGG GGGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45724253	mCV24285381	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss147327739	ENSMUSSNP4095719	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321285229	CHEV_4_118933402	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33004426					SNP	G	G	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119117994 () rs orientation: forward

Symbol	Name	Function Class
Cldn19	claudin 19	mRNA-UTR
Rr598550	regulatory region 598550	1152 bp distal
Rr598551	regulatory region 598551	713 bp distal
Rr598552	regulatory region 598552	719 bp distal
Rr598553	regulatory region 598553	332 bp proximal
Tssr38732	transcription start site region 38732	1467 bp upstream