rs33002180 SNP Detail

Summary

• ID
  rs33002180
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:53458371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTAAA ATTACTGCAT
  ATTTTGTTTC AAATTTTTAA AAATGCATTG CTTCAAATAA TTAACAAATG CTGACATATT
  TTTTTTCTCT TTTCAGCCTT GTCAGGTTAG TTACATACAA GGTCATATTC TGATAGCAAA
  GGTGGCACCT AGAAATTTTC TGCCCCAAGC ACTGGTCAGA CAGTATAATA ATACAACAAT
  K
  ATTCCATTTT ATGTACATAT AAGAACTGGA AAAGGAGCAC TAAAGTAATG ATTTGTCTTC
  ATTATTGACA CTTATGTGGT ATTCAGAGTA TAATTCTTAT CCTAAAATCA CTTTTTGTTT
  GCAGTTACAA CATACAATAG CATAAACGAT AGTATCCTGT AATTGGAGAC ATTTCTAACT
  GTACCTGTCA TGTGTTAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss46221567	mCV24471794	ABI	CRAMUS_MOUSE	f	SNP	G	G				T	T
ss60613047	NES16309439	PERLEGEN	MM_PANEL2	f	SNP		G	T	T	T		T	T	T	T	T
ss144884314	ENSMUSSNP3803725	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33002180					SNP	G	G	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60613047	NES16309439	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:53458371 () rs orientation: forward

Symbol	Name	Function Class
D8Mit230	DNA segment, Chr 8, Massachusetts Institute of Technology 230	258 bp proximal
Gm23666	predicted gene, 23666	1072 bp upstream