rs33002081 SNP Detail

Summary

• ID
  rs33002081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150130600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAAATAC CACGCCCAAG
  GCTACCTATA GCAAGAGGGG TTTATGGCTC CAGGGGGATA GCAGTCTATT ACTGTCACAG
  CAGCTGGGAG AGGGGCAGCA GGCAGGCGTG GCAACAGGAA CAGCCAAGCC CTCATGTCTC
  AAATAGCAAG CAGGAAGCAG GAAAAAAATG TATACAGTGA CATTATAAAG AAAAAAAAAA
  R
  GGGGGCCTCC GAAGATGGAA AAGTGGGCAA GAATTGGGCT TTTGTTTTTA GTTTTCTGGT
  TGGTGGAATC TATTGGTATA CAGTGTATCT ATCTCGTGTT AGCTGCCCAC ATCAAGGCCT
  TTGGTGATTC TCAGAGAAAA GCAGGATACA GGGAAGCCAG CAGGGATGGA GCACCCAGAT
  TGGAATGTTC CCATGGGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45724643	mCV23448170	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148045809	ENSMUSSNP2465783	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33002081					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150130600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15344	CpG island 15344	1956 bp proximal
Gm69230	predicted gene, 69230	983 bp downstream
Rr605155	regulatory region 605155	1562 bp proximal