rs33001404 SNP Detail

Summary

• ID
  rs33001404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:144923766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG TTTTGTCTTG ATGCCAGTGT
  Y
  TCCCCAGCAA ACATTGTCTG AGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45723769	mCV22764434	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss147848510	ENSMUSSNP5854240	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss321412805	CHEV_4_144787099	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33001404					SNP	C	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:144923766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15267	CpG island 15267	1855 bp distal
Rr398672	regulatory region 398672	1978 bp downstream
Rr604321	regulatory region 604321	1701 bp distal
Rr604323	regulatory region 604323	114 bp distal
Rr604324	regulatory region 604324	1544 bp proximal