rs33001068 SNP Detail

Summary

• ID
  rs33001068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154609631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATCCTCAG GGAAGCCAAA CGGAACGGGC CCTCCTTGGC
  TTTCATCTGT CATCTTTGCT CCAATGTCAC TGCTTACTCT CTTGTAGCAA ACGAGTCCCA
  Y
  GTTAATGATC ACAGAATTCA ATTACTCTGA TTCACAGAAC TTAATTATGA GGGTGAAGCT
  GTATTATACA TGTAATCTGA GGCCATTCTG AGATTACAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45724064	mCV23471154	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss46768436	NES10991093	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	C	C	C		C	T	C	C	C	C	C	C	C
ss148102927	ENSMUSSNP1791957	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33001068					SNP	T	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46768436	NES10991093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154609631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm16	PR domain containing 16			Intron
				Noncoding-Transcript-Variant
Rr606197	regulatory region 606197			1910 bp distal
Rr606198	regulatory region 606198			837 bp proximal