rs33000339 SNP Detail

Summary

• ID
  rs33000339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137747721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC AGGTGCACTT GCAATGTCAG
  Y
  ATTCGAGAGG CCACAGTGTG AAATC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45723760	mCV24053609	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss147629335	ENSMUSSNP1275195	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss321369762	CHEV_4_137576325	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33000339					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137747721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3			Intron
				Noncoding-Transcript-Variant
Rr602819	regulatory region 602819			1995 bp distal
Rr602820	regulatory region 602820			1255 bp proximal
Tssr39815	transcription start site region 39815			626 bp downstream