rs32999506 SNP Detail

Summary

• ID
  rs32999506
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189283816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGATAGT TGCTTGTCGG
  ATGTTGATTT TTAATACTGC AGCAACTCTT GGGTTCAGCA AGACTTGCTT TGCGTGAGGC
  CTGTGAGACA GTGGAATATG TGTGTATACA CACCTTTCAC ACACTAGGCT GACCTGAAAC
  TTCAGGCTGT TTTCCGCTAG TTAAATTAGG ATGATTGCTC TCTCTGCCCC GCCATCTCAG
  Y
  CTCAGACATG CTATTTTCTC TCCCCAACAT CCTTTTCCTG TTTTGTTTGG ATTTTTTTCT
  TTCCTCTCCA CAGTCTCTGC CTCTGACCCT TCAGGCTTCT GGCCAGTCCA CCGTGCCCTA
  CTCTGAACAA TTTCCACAGC CTCGGAAATG ATTGCCACCA CCTGCCCACC ACTGCCAGAA
  GCAACAGTAG CTGCCGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46758834	NES10634920	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32999506					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46758834	NES10634920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189283816 () rs orientation: forward

Symbol	Name	Function Class
Rr425797	regulatory region 425797	581 bp distal