rs32999457 SNP Detail

Summary

• ID
  rs32999457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137183521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTAGGCT TCCCATCAAT
  CATTGCACCT TAGGGCCCAA TTCTTTACGG GAGAAAACTT GGTCCCTTCC ACTCGGGACA
  CCAAGAGCCT GCAGTGCCTG GGTTCCACTG GTTTGAGCTA TCAACGGCCT AACAGCCAGA
  CTTTCAATGT CGAGACACCT CAGAGGCCTG CTCCTTATTA TTGACACTCC CTTGTCTCCC
  Y
  GGCAACATAA AAGCCAATAG CTCTGAGTCT AGAAGGGGGT CGCTTGAGAA AAGGCAGAAC
  TCTGAGGCTC CCAGCATTCT TTTGCCCTTA GAAGCAACAG TGACCTGCTG AAGCCTCTGA
  CAAGTTCCTA TGGTCAAGCA GGGAAGGTAA CAGGCCCAAG TGTCCCCCTC GTGGGATCAC
  AAGGATAGGA GGAAAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45724122	mCV22550004	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss147607088	ENSMUSSNP6839357	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321364039	CHEV_4_137012125	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs32999457					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137183521 () rs orientation: forward

Symbol	Name	Function Class
1700013G24Rik	RIKEN cDNA 1700013G24 gene	749 bp downstream
Gm13010	predicted gene 13010	within coordinates
Rr602623	regulatory region 602623	1136 bp proximal
Tssr39748	transcription start site region 39748	1604 bp downstream
Tssr39749	transcription start site region 39749	1438 bp downstream
Tssr39750	transcription start site region 39750	1426 bp downstream