rs32997770 SNP Detail

Summary

• ID
  rs32997770
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189135874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGAC AATTCATACT
  ACAAAAGTTG TGCAAGAGAC ACGTTTTTGT TCCCATGTGA AAAATCCCTC CTGTGCACCC
  ATATGTGTGC ACACCATACA GAGCATGCTC TCTCTGCTGG GTTTTTCAGG GCTGAGAGAG
  GGCTTTCAGC AAGCCTCACC TGAACTCTGC TCCCTAGACA CCATTTGCTA GATGACACTG
  R
  TTCATGGTAG AGTTGCCTGT GCAGAGGAGA CTGGAAAGGG GAAGTGTAAC AGTTATGCTC
  ACTTGACCAG TGTGTGACCT GTGACCTTTG TCTCATTAAT GTGCTCTTGG GCTATAATCC
  GATGAAGCTG CCGGCCACTG GAACCCTGAA GAATAAACAG AATCAGATGG CGTTTATCGC
  ATGAGCTTCA TGGAAAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46757418	NES10640353	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32997770					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46757418	NES10640353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189135874 () rs orientation: forward

Symbol	Name	Function Class
Kcnk2	potassium channel, subfamily K, member 2	1404 bp upstream
Rr372626	regulatory region 372626	1936 bp upstream
Rr425790	regulatory region 425790	969 bp distal
Rr425791	regulatory region 425791	218 bp distal
Rr425792	regulatory region 425792	1510 bp proximal
Tssr15714	transcription start site region 15714	916 bp upstream
Tssr15715	transcription start site region 15715	907 bp upstream