rs32997767 SNP Detail

Summary

• ID
  rs32997767
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:189135830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGCATT AAATGTTGGC
  GAGAAGTAAC CTCGCCCTTC CATCAGGCAG AGACAATTCA TACTACAAAA GTTGTGCAAG
  AGACACGTTT TTGTTCCCAT GTGAAAAATC CCTCCTGTGC ACCCATATGT GTGCACACCA
  TACAGAGCAT GCTCTCTCTG CTGGGTTTTT CAGGGCTGAG AGAGGGCTTT CAGCAAGCCT
  Y
  ACCTGAACTC TGCTCCCTAG ACACCATTTG CTAGATGACA CTGATTCATG GTAGAGTTGC
  CTGTGCAGAG GAGACTGGAA AGGGGAAGTG TAACAGTTAT GCTCACTTGA CCAGTGTGTG
  ACCTGTGACC TTTGTCTCAT TAATGTGCTC TTGGGCTATA ATCCGATGAA GCTGCCGGCC
  ACTGGAACCC TGAAGAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46757415	NES10640352	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32997767					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46757415	NES10640352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189135830 () rs orientation: forward

Symbol	Name	Function Class
Kcnk2	potassium channel, subfamily K, member 2	1360 bp upstream
Rr372626	regulatory region 372626	1980 bp upstream
Rr425790	regulatory region 425790	925 bp distal
Rr425791	regulatory region 425791	174 bp distal
Rr425792	regulatory region 425792	1554 bp proximal
Tssr15714	transcription start site region 15714	872 bp upstream
Tssr15715	transcription start site region 15715	863 bp upstream