rs32996870 SNP Detail

Summary

• ID
  rs32996870
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148642838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGAGTGTTCT TAACTGCTTC AAAACCTCCC TTCCCTCCCT CGCCCAATGT TTTAAACAAA
  TTGGAAAAAC CCAATCCTAA CGTGGTTTTG CACGTCTTTA ATCCCAGCAC TTGAGTGGAT
  GAGGCAGGCG GATCGGAGGT GAAGAGCTAG CTTTAAATGT GATTTAGATT GTACCCTCCC
  TCCAGTTCTC AGCCGAGGCC ACAGGTTTGT TAGGATACAG CGTGAAATCA AAGAAAAGCC
  GAAATTTCCC CATCGTTAAG GCAAGACCCA TAAAGCTACG CTACTTGGTG AGGGTGGGGG
  K
  GGTGGGGAGG ATTTAACCGC GCGCATGCGT GTTACGCCCG CCTCGGGCAG CCGGAACAAT
  CTCGCGAGAA GAGCCGCCCT AGGACGGAAA AATGGCGCCT CCCAGTCCCC GGGAGCATCA
  GTCCGCGCCG GCGACCAGTG CGACCAAGCC TGACGCGGAG ATGGTACTGC CTGGCTTCCC
  CGATGCAGAC AGCTTCGTAA AGGTGAGTTT GCGGGCCCTG GGGCTCCCCA GGAGCCCCCT
  GTTCTGGCCG GAAACGGGTC TGAGGCTACG GGCTTCCGGC GGCCTGACGG CGCGCACGGA
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss45723922	mCV24946553	ABI	CRAMUS_MOUSE	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs32996870					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148642838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15305	CpG island 15305	within coordinates
Exosc10	exosome component 10	48 bp upstream
Mtor	mechanistic target of rapamycin kinase	698 bp downstream
Rr398859	regulatory region 398859	within coordinates
Rr604703	regulatory region 604703	within coordinates
Tssr40280	transcription start site region 40280	41 bp upstream
Tssr40281	transcription start site region 40281	108 bp upstream
Tssr40282	transcription start site region 40282	354 bp upstream