rs32990412 SNP Detail

Summary

• ID
  rs32990412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101504561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGC GGAGTCCGCG AAGTGGAGGA
  R
  GGCGTTGGGG GAGGGTCTCC ATGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45723666	mCV22762269	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss321230714	CHEV_4_101319969	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32990412					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101504561 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14504	CpG island 14504	within coordinates
Leprot	leptin receptor overlapping transcript	361 bp upstream
Rr367655	regulatory region 367655	within coordinates
Rr398357	regulatory region 398357	187 bp upstream
Rr596187	regulatory region 596187	within coordinates
Rr596188	regulatory region 596188	15 bp distal
Rr596189	regulatory region 596189	333 bp proximal
Rr596190	regulatory region 596190	440 bp proximal
Tssr38009	transcription start site region 38009	312 bp upstream
Tssr38010	transcription start site region 38010	348 bp upstream
Tssr38011	transcription start site region 38011	378 bp upstream
Tssr38012	transcription start site region 38012	399 bp upstream